toCarthagene
NAME
toCarthagene
DESCRIPTION
Build 2 types of dataset file for the carthagene binary from allele information deduced by QTLMap routines * Backcross format * Hybrid format Format of the parameter file * in_genealogy=<filepath> * in_genotype=<filepath> * in_format=1|2 . 1 >intercross format, 2> hybrid format * opt_unknown_char=<code for missing data> Notation Synonym Possible Genotypes 1 A F0 |M0 2 F0 |M1 3 F0 |M0 , F0 |M1 4 F1 |M0 5 F0 |M0 , F1 |M0 6 H F0 |M1 , F1 |M0 7 D F0 |M0 , F0 |M1 , F1 |M0 8 B F1 |M1 9 F0 |M0 , F1 |M1 a F0 |M1 , F1 |M1 b F0 |M0 , F0 |M1 , F1 |M1 c F1 |M0 , F1 |M1 d F0 |M0 , F1 |M0 , F1 |M1 e F0 |M1 , F1 |M0 , F1 |M1 f F0 |M0 , F0 |M1 , F1 |M0 , F1 |M1 Backcross format result file ---------------------------- data type f2 intercross <nb animal> <nbmarker> 0 0 *<marker1> <1..f>........... *<marker2> <1..f>........... Backcross format result file ---------------------------- data type f2 backcross <nb animal> <nbmarker> 0 0 *<marker1> <A,H,D,B>........... *<marker2> <A,H,D,B>........... ********* Execution ********* qtlmap2cartha p_analyse an output file "to_carthagene_chr" will be created.
SEE ALSO
http://www.inra.fr/qtlmap