Index

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - Q - R - S - T - U - V - W - X - Y - Z - 0 - 1 - 2 - 3 - 4 - 5 - 6 - 7 - 8 - 9

A

absi add_animal_genea add_effcov add_effcov_multi add_general_mean add_general_mean_multi add_haplotype_effect add_other_continue_traits_as_cov add_polygenic_effect add_polygenic_effect_multi add_qtleffect add_qtleffect_multi add_qtlinteraction all_key ALL_LABEL_MODEL alleles allocate_vector_ am am am am2 AM_MAX AM_MIN analyse ANALYSE ANALYSE_2QTL_INTERACTION analyse_cuda ANALYSE_DEV_1 ANALYSE_DEV_2 ANALYSE_MULTIRAIT ANALYSE_MULTITRAIT_DA ANALYSE_MULTITRAIT_INCIDENCE ANALYSE_MULTITRAIT_INCIDENCE_LU ANALYSE_TRAIT_COV_CONTINGENCE ANALYSE_UNITRAIT ANALYSE_UNITRAIT_CONTINGENCE ANALYSE_UNITRAIT_LA ANALYSE_UNITRAIT_LD ANALYSE_UNITRAIT_LDJH ANALYSE_UNITRAIT_LDLA ANALYSE_UNITRAIT_LDLA_CROIS ANALYSE_UNITRAIT_LINEAR_LA_HETERO ANALYSE_UNITRAIT_LINEAR_LA_HOMO ANALYSE_UNITRAIT_LINEAR_LD_HETERO ANALYSE_UNITRAIT_LINEAR_LD_HOMO ANALYSE_UNITRAIT_LINEAR_LDLA_HETERO ANALYSE_UNITRAIT_LINEAR_LDLA_HOMO ANALYSE_UNITRAIT_MODLIN ANALYSE_UNITRAIT_MODLIN_COX ancetre animal ap ap ap ap2 AP_MAX AP_MIN

B

BASE_STEP BC_KEYWORD bete bilan_shared_haplo build_incidence_matrix

C

calcul_corcd calcul_phases_symmax2sat_dam calcul_phases_symmax2sat_sire calcul_rang calcul_y_cd calculCd carac carac_t carpm carpm carpm1 carpm11 carpm2 carpp carpp carpp1 carpp11 carpp2 carppdf carppdf carppdf11 carppdf11 carppdf12 carppdf22 cary cary11 carydf carydf01 cd cdt ch change_interaction_effect change_qtleffect change_qtleffect_multi check_allocate check_cd check_change_maker_windows check_HWE check_map check_marker_name check_recombination_sire check_traits_and_fathers check_typage chromo chromo_is_select clean_lrt_solution cli_get_analyse cli_get_family cli_get_haplotype cli_get_nqtl cli_get_nsim cli_get_optimization cli_get_parameters_file cli_is_calcul_cd cli_is_debug cli_is_estimate_thresholds cli_is_hdam cli_is_help cli_is_help_panalyse cli_is_help_paramsim cli_is_nopoly cli_is_nsim cli_is_permute cli_is_print_all cli_is_quiet cli_is_simulation cli_is_transcriptomic_data cli_is_verbose cli_is_xmloutput cli_print_help cli_print_qtlmap_version COMMON_ANALYSE comp_haplo comp_haplo_reduit confbin confusion confusion_between_qtl_and_effect confusion_multi_type1 confusion_type1 contingence contingence_cox contingence_ldla copy copy_dataset copy_description_type copy_incidence_desc corcd corniv corperf CORR_ALERT_TYPE corred corregm corregp correm correp correr count_haplo count_haplo_complet courbe_lin_ldla cov covar covdir create_grid_file_2QTL create_sparse_W CREATE_STRUCT_GRAND_PARENT CREATE_STRUCT_PARENT current_chr current_chr current_chr current_chr current_chr current_chr current_chr current_chr2 current_ic current_ic current_ic current_line

D

DATA dataset DATASET_TYPE debug_write_incidence DEFAULT_PARAM_MAX DEFAULT_PARAM_MIN default_values DESC_EFFECT_TYPE determ dget_str dloggrand DP

E

eff eff effdf effdf effp effp end_analyse_DA_1QTL end_analyse_gen end_analyse_lin_gen end_analyse_linear end_analyse_modlin end_analyse_modlin_cox end_analyse_modlin_ldla end_analyse_multitrait end_analyse_parameterfile end_analyse_unitrait_1QTL end_analyse_unitrait_2qtl end_contingence end_dataset end_incidence end_incidence_multi end_output_handler end_position end_sub_1qtl end_sub_1qtl end_sub_2qtl EPS_EM EPS_LINEAR_HETEROSCEDASTIC estfem estfem_multi estim_cholesky estime estime_multi estmum estmum extend extendListCorrAnim extendListNa extendListTrio EXTRACT

F

f0 f0 f0 f0 f0 f01 F2_KEYWORD f_1 f_1 family_type femelle fget_str file_exist fill_nonull_elements filter_vci fixe_structure_model fm0 fm0 fm0 fm0 fm0 fm01 fm1 fm1 fm1 fm1 fm1 fm2 fm21 fm_1 fm_1 fm_2 FMT_INT FMT_INT_LONG FMT_MAX_BUFFER FMT_REAL fp0 fp0 fp0 fp0 fp0 fp01 fp1 fp1 fp1 fp1 fp1 fp2 fp21 fp_1 fp_1 fp_2 free_internal_struct free_internal_struct_ldla funct_0qtl funct_0qtl funct_0qtl_discret_family funct_0qtl_discret_unitrait funct_0qtl_family funct_0qtl_modlin funct_0qtl_modlin_cox funct_0qtl_modlin_family funct_0qtl_modlin_ldla_family funct_1car_2qtl funct_1car_2qtl_family funct_1qtl funct_1qtl funct_1qtl_discret_family funct_1qtl_discret_unitrait funct_1qtl_family funct_1qtl_modlin funct_1qtl_modlin_cox funct_1qtl_modlin_family funct_1qtl_modlin_ldla funct_1qtl_modlin_ldla_family funct_mcar_0qtl funct_mcar_0qtl_family funct_mcar_1qtl funct_mcar_1qtl_family

G

gamete gen_loop_opti_nqtl_multi gen_opti_nqtl gen_opti_nqtl_cuda gen_opti_nqtl_multi genea_list genea_niv geneaFileDefined genealogy_outbred_gen GENEALOGY_TYPE genotyp genotypeFileDefined genotypm GET get_arg get_binary_name get_correlations get_dx get_eff_paternal_and_total get_gradient get_gradient_optim_fam get_gradient_optim_fam_multi get_gradient_optim_fam_sire get_h_from_w get_ilong get_incidence_reduit get_ind_pheno get_int get_int_char get_inv_residual_covariance_matrix get_inv_residual_covariance_matrix get_inv_residual_covariance_matrix_cd get_inv_residual_covariance_matrix_LU get_inv_residual_covariance_matrix_LU_cd get_key_value get_key_value get_listProgenies get_long_step_morgan get_maxnbgenotypedam get_maxnpo get_name_analyse get_nb_arg get_npo get_pdd_at_mark get_pheno get_pos get_precision get_real get_real_char get_summary_panalyse get_type_data_analyse get_value get_value_optim_fam get_value_optim_fam_multi get_value_optim_fam_sire getglobalprob getprob_lin getprobld_lin global_gamete gmere gpere grand

H

h2 h2_t haplo haplo_complet haplotype haplotype_external haplotype_offspring haplotype_offspring_v1 haplotype_SNP haplotype_SYMMAX2SAT_SNP haplotype_V1 haplotype_V2 haplotype_V3 help_panalyse Hy

I

iam iam_multi iget_str in_carte in_genea in_param_ef in_parsim in_perfs in_race in_typage INCIDENCE_GEN_STRUCT INCIDENCE_INTERACTION INCIDENCE_TRAIT_COV INCIDENCE_TYPE INCIDENCE_TYPE_CLASSIC INCIDENCE_TYPE_LD INCIDENCE_TYPE_LDLA index_key index_position_marker indicemod INIFINY_REAL_VALUE init_analyse_DA_1QTL init_analyse_gen init_analyse_lin_gen init_analyse_linear init_analyse_modlin init_analyse_modlin_cox init_analyse_modlin_ldla init_analyse_multitrait init_analyse_unitrait_1QTL init_analyse_unitrait_2QTL init_contingence init_dataset_1car init_dataset_ncar init_genotype_simul init_incidence init_incidence_multi INIT_INTERNAL_MAP_STRUCTURE init_model_struct init_output_handler init_perf_animal init_permutation init_pheno init_position init_random init_simul_genealogy init_simul_marker init_startpoint init_sub_1qtl init_sub_1qtl init_sub_2qtl init_traits_simul init_workstruct initialise_struct_internal initialize_dev_generic_keys initialize_qtlmap_context initialize_tocartha_context INPUT INT_NOT_DEFINED int_qtl int_qtl_t internal_read_file inv_vci ios_simul_file is_multitrait_analysis ITER_EM_MAX

K

K_CHOLESKY K_CHROM K_COEFFDA K_FREQALL K_GENEA K_GENOTYPE K_GRID2QTL K_HAPLOTYPES K_KEY_DEV_GEN K_LINEAR_CONV K_LONG_MIN_IBS K_LONGHAP K_LRTDAM K_LRTSIRE K_MAP K_MATEFF K_MAX_LINEAR_ITERATION K_MINDAMPHASEPROB K_MINSIREPHASEPROB K_MODEL K_NB_HAPLO_PRIOR K_NDMIN K_OPTIM_H_PREC K_OPTIM_MAXEVAL K_OPTIM_MAXTIME K_OPTIM_TOLF K_OPTIM_TOLG K_OPTIM_TOLX K_OUTPUT K_OUTSIM K_PARAMSIM K_PATEFF K_PDECPLE K_PDED K_PHASES K_PHASES_OFFSPRING K_PHASES_OFFSPRING_MARK_END K_PHASES_OFFSPRING_MARK_START K_PROB_HAPLO_MIN K_PROB_SEUIL_RECOMB K_PSEUILHWE K_RACE K_STEP K_SUMM K_THRES_CONFUSION K_TRAITS K_UNKNOWN_GENO key_exist key_exist key_exist_file keys KIND_PHENO

L

LABEL_GENEALOGY LABEL_MARKERS LABEL_NAME_TRAIT LABEL_QTL LABEL_SIMULTRAITS LABEL_TRAITS LEN_BUFFER_LINE LEN_BUFFER_WORD LEN_DEF LEN_L LEN_LINE LEN_OPT LEN_S LEN_W LENGTH_MAX_FILE LIBNAG_AVAILABLE likelihood_discret_h0_family likelihood_discret_hn_family likelihood_empty likelihood_h0_family likelihood_hn_family likelihood_ncar_h0_family likelihood_ncar_h0_family_LU likelihood_ncar_h0_family_withcd likelihood_ncar_h0_LU likelihood_ncar_h0_LU_family_withcd likelihood_ncar_hn_family likelihood_ncar_hn_family_LU likelihood_ncar_hn_family_withcd likelihood_ncar_hn_LU likelihood_ncar_hn_LU_family_withcd likelyprob LINEAR_HETEROSCEDASTIC LINEAR_HOMOSCEDASTIC liste_gamete liste_haplo liste_haplo_complet liste_haplo_reduit liste_shared_haplo listelev listModelTrait loc_haplo local_gamete LOG log_debug_genea log_descriptif_genealogy log_descriptif_traits log_infoqtldefinedbyuser log_marker_description log_simulation_message LONG_MIN_IBS longhap

M

m_qtlmap_analyse m_qtlmap_analyse.F95 m_qtlmap_analyse_discret_unitrait m_qtlmap_analyse_discret_unitrait.f95 m_qtlmap_analyse_gen m_qtlmap_analyse_gen.f95 m_qtlmap_analyse_lin_gen m_qtlmap_analyse_lin_gen.f95 m_qtlmap_analyse_modlin m_qtlmap_analyse_modlin.f95 m_qtlmap_analyse_modlin_cox m_qtlmap_analyse_modlin_cox.f95 m_qtlmap_analyse_modlin_ldla m_qtlmap_analyse_modlin_ldla.f95 m_qtlmap_analyse_multitrait m_qtlmap_analyse_multitrait.f95 m_qtlmap_analyse_multitrait_DA m_qtlmap_analyse_multitrait_DA.f95 m_qtlmap_analyse_unitrait m_qtlmap_analyse_unitrait.f95 m_qtlmap_cd m_qtlmap_cd.F95 m_qtlmap_cli m_qtlmap_cli.F95 m_qtlmap_constant m_qtlmap_constant.f95 m_qtlmap_data m_qtlmap_data.f95 m_qtlmap_format_carthagene m_qtlmap_format_carthagene.f95 m_qtlmap_genealogy m_qtlmap_genealogy.f95 m_qtlmap_genotype m_qtlmap_genotype.f95 m_qtlmap_haplotype m_qtlmap_haplotype.f95 m_qtlmap_haplotype_data m_qtlmap_haplotype_data.f95 m_qtlmap_haplotype_external m_qtlmap_haplotype_external.f95 m_qtlmap_haplotype_ldla m_qtlmap_haplotype_ldla.f95 m_qtlmap_haplotype_V1 m_qtlmap_haplotype_V1.f95 m_qtlmap_haplotype_V2 m_qtlmap_haplotype_V2.f95 m_qtlmap_incidence m_qtlmap_incidence.F95 m_qtlmap_incidence_linear m_qtlmap_incidence_linear.F95 m_qtlmap_incidence_multi m_qtlmap_incidence_multi.f95 m_qtlmap_incidence_optim m_qtlmap_incidence_optim.F95 m_qtlmap_isymmax2sat m_qtlmap_isymmax2sat.f95 m_qtlmap_log m_qtlmap_log.F95 m_qtlmap_map m_qtlmap_map.f95 m_qtlmap_math m_qtlmap_math.F95 m_qtlmap_optimization m_qtlmap_optimization.F95 m_qtlmap_output_handler m_qtlmap_output_handler.f95 m_qtlmap_output_xml m_qtlmap_output_xml.f95 m_qtlmap_output_xml/print_pded_xml m_qtlmap_parameter_file m_qtlmap_parameter_file.f95 m_qtlmap_phase_offspring m_qtlmap_phase_offspring.f95 m_qtlmap_simulation m_qtlmap_simulation.f95 m_qtlmap_solve_linear m_qtlmap_solve_linear.F95 m_qtlmap_tools m_qtlmap_tools.F95 m_qtlmap_traits m_qtlmap_traits.f95 manage_data manage_simulator_traits mapFileDefined MARG_HELP mark mark0 MATH_QTLMAP_F01ADF MATH_QTLMAP_F03ABF MATH_QTLMAP_G01AAF MATH_QTLMAP_G01EAF MATH_QTLMAP_G01EBF MATH_QTLMAP_G01ECF MATH_QTLMAP_G01EEF MATH_QTLMAP_G01FAF MATH_QTLMAP_G03ACF MATH_QTLMAP_G05EHF MATH_QTLMAP_INFO MATH_QTLMAP_INVDETMAT MATH_QTLMAP_INVDETMATSYM MATH_QTLMAP_LOWERTAIL_BETA MATH_QTLMAP_M01CAF MATH_QTLMAP_M01DAF MATH_QTLMAP_S15ADF MATH_QTLMAP_S15AEF matmul_incidence MAX_CAS_ALLOC MAX_FILES_INPUT MAX_KD_PRINT MAX_LINEAR_ITERATION MAX_MARKER MAX_QTL MAX_SIZE_MAP MAXCAR MAXNB_KEY_DEV_GEN mcov meff mere minimizing_e04jyf minimizing_funct minimizing_funct_family minimizing_funct_family_multi minimizing_funct_family_sire minimizing_lbfgs minimizing_nlopt mint model_lin_h0 model_lin_hn model_optim_family model_optim_h0 model_optim_hn model_optim_multi_family model_optim_multi_h0 model_optim_multi_h0_LU model_optim_multi_hn model_optim_multi_hn_LU model_optim_multi_LU model_trait model_XT_V_X model_XT_X modele modele_heteroscedastic modele_homoscedastic mselec my_desc my_listdesc my_xincreduit my_xincreduitmul

N

nall name_haplo name_haplo_complet name_haplo_reduit name_optim namecov namefix namest namest_multi natureY natureY_t NB_DES_MIN nb_gam nb_gam_desc nb_gam_mere nb_gam_pere nb_haplo nb_haplo_complet nb_haplo_possible NB_HAPLO_PRIOR nb_max_haplo NB_OPTI_NLOPT nb_qtl_def nb_value_pheno nbco nbef nbfem nbniv nbnivest ncar ncarcat nchr ncov nd ndelt ndelta ndesc ndm NDMIN need_normalize_data new new_lrt_solution next_word next_word_char nfem nfix ngend ngenom ngm ngmgp ngp niv nivdir nivx nlev nm NMANQUE nmarker_in_genotype_file nmes nmk nmod nmp nmumest normal normalize_data np NQTL_DEFAULT nrgm NSIM_DEFAULT nteffmax ntlevm ntlevp ntnifix ntniv ntnivmax ntnivmaxtotal ntot nuis nuis_t num_haplo_desc num_haplo_mere num_haplo_pere NUMBER_ALL_KEYS NUMBER_AUTO_KEYS NUMBER_OPT_KEYS numero

O

OPT_CALCUL OPT_CENSORED_CALCUL OPT_CLASSIC OPT_DEBUG OPT_DEBUG_SHORT OPT_EQTL OPT_ESTIME_THRESHOLDS OPT_ESTIME_THRESHOLDS_SHORT OPT_FAM OPT_FAM_MULTI OPT_FAM_SIRE OPT_HAPLOTYPE OPT_HDAM OPT_HELP OPT_HELP_PANALYSE OPT_HELP_PARAMSIM OPT_NOPOLY OPT_NSIM OPT_OPTIM OPT_PERMUT OPT_PRINT_CLASSIC OPT_QTL OPT_QUIET OPT_QUIET_SHORT opt_sib OPT_SIB_FS OPT_SIB_HS OPT_SIBF OPT_SIM OPT_SNP OPT_VERBOSE OPT_VERBOSE_SHORT OPT_XML opti_0qtl opti_0qtl opti_0qtl_cuda opti_0qtl_discret_unitrait opti_0qtl_linear opti_0qtl_modlin opti_0qtl_modlin_cox opti_0qtl_modlin_ldla opti_0qtl_multi opti_1car_2qtl opti_1qtl opti_1qtl_discret_unitrait opti_1qtl_modlin opti_1qtl_modlin_cox opti_1qtl_modlin_ldla opti_2qtl_linear_interaction opti_DA_0qtl opti_DA_1qtl OPTI_LAST OPTI_LBFGS opti_mcar_0qtl opti_mcar_1qtl opti_multitrait_DA opti_multitrait_modlin opti_multitraits OPTI_NAG opti_nqtl opti_nqtl_cuda opti_nqtl_multi opti_unitrait opti_unitrait_discret opti_unitrait_incidence opti_unitrait_incidence_cuda opti_unitrait_interaction opti_unitrait_modlin opti_unitrait_modlin_cox opti_unitrait_modlin_new opti_user opti_user_fam OPTIM_DEFAULT optim_H_PRECISION OPTIM_HETEROSCEDASTIC optim_maxeval optim_maxtime optim_tolf optim_tolg optim_tolx optinit optinit_da optinit_mcar ordre ordref ordrem ordrep OUTBRED_KEYWORD OUTPUT

P

par0 par1 parse_real_array PAS pb_haplo pb_haplo_complet pb_haplo_desc pb_haplo_reduit pc_all pdd pdd_at_position pdd_at_position_multi pded pded_v5 pded_v5_kd pded_v5_optim pdegm pdegm_snp pdegp pdegp_snp pere perform_DA_1qtl phasm phasp pheno PHPSEUIL pm_ldla pmt point_gamete posi posi0 posi_h1 posif posif0 posim posim0 POSITION_LRT_INCIDENCE pp_ldla ppt prbm prbp precis precis0 precis1 precision prepinc presentc presentg print_allelic_origin print_coeff_linear_combination print_coeff_linear_combination_max print_confusion print_courbe_LRT print_dam_phase print_end_multitraits print_end_unitrait print_freqall print_incidence_solution print_incidence_solution_risk_factor print_LRT print_LRT_2QTL print_lrt_solution print_maximum_LRT print_offspring_phase print_pat_mat_effect_2QTL print_paternal_maternal_effect print_pded print_residual_correlation print_resume_simulation print_resume_simulation_2 print_sire_phase print_start_multitrait_DA print_start_multitraits print_start_unitrait print_summary_analyse print_summary_panalyse print_test_nuisances print_transcriptome print_transcriptome_H0 print_transcriptome_Struct_famille print_transmission_allele prob_gam prob_gam_mere prob_gam_pere PROB_HAPLO_MIN PROB_PHASE_DESC prob_seuil_gam PROB_SEUIL_RECOMB proba_haplo_complet probg probin prop prop_haplo_info prot PRSEUIL PSEUILHWE ptfin

Q

qtlmap qtlmap.F95 QTLMAP_TYPES qtlmap_types.f95 quantile QUANTILE1

R

rac race_h race_haplo_complet raceFileDefined rangy read_analyse_file read_attributes_discrete_trait read_correlation_matrix read_genealogy read_genotype read_map read_model read_perf_by_column read_perf_by_line read_qtl_effect_on_trait read_simulation_file read_traits REAL_NOT_DEFINED reconstructed recup release release_copy_incidence_desc release_data release_description_type release_incidence_solution release_lrt_solution release_model_trait release_ws REMOVE rep_reprom rep_reprop repfem repmere reppere repro reprom reprop rf RhoG RhoG_t rhoi rhoi2 rhoi2_1 rhoi2_2 RhoP RhoP_t rm

S

scale_variables_dam set_absi set_allele_info_vector set_allocation set_allocation set_base_and_step set_corresponding_vector set_corrxinc set_count_discrete set_estfem set_estime set_file_output set_filter_optim set_haplo_final set_haplo_for_ldla set_haplotype_offspring_context set_MR set_ntnivmax set_optimization set_phasm set_phasp set_pheno set_proportion_discrete set_RHS set_RHS_V set_simulation_genealogy set_simulation_marker set_simulation_qtl set_simulation_simultraits set_simulation_traits set_soglia set_solution set_solution_hypothesis0 set_solution_hypothesis0 set_solution_hypothesis0 set_solution_hypothesis0 set_solution_hypothesis0 set_solution_hypothesis0 set_solution_hypothesis1 set_solution_hypothesis1 set_solution_hypothesis1 set_solution_hypothesis1 set_solution_hypothesis1 set_solution_hypothesis1 set_solution_hypothesis1 set_solution_hypothesis2 set_tab_ibs set_VInv set_xml_output setting_alloc_pdd seuil SEUIL_CHO shared_haplo SIB_DEFAULT sig0 sig01 sig1 sig1 sig1 sig1 sig1 sig2 SIG_MAX SIG_MIN sigt sim_carte sim_genea sim_genea_F2_BC sim_genea_outbread sim_perf_shuffling sim_perf_tirage sim_QTL sim_transform_discret sim_typ simTyp SIMULATION simulGenea simulMap simulTraits SireFamily_type solve_lin solve_lin_dgefs solvesymmax2sat somcd somcddf sompm sompm sompm1 sompm11 sompm1m2 sompm1y sompm2 sompm2y sompmy sompmy sompmy11 sompp sompp sompp1 sompp11 sompp1m1 sompp1m2 sompp1p2 sompp1y sompp2 sompp2m1 sompp2m2 sompp2y somppdf somppdf somppdf1 somppdf11 somppdf2 somppm somppm somppm11 somppy somppy somppy11 somppydf somppydf somppydf1 somppydf11 somppydf2 somy somy11 somydf somydf01 somyy11 somyydf01 sort_haplo Ssy std std std std2 stop_application stop_on_error str STRING_NOT_DEFINED Sy

T

tab_haplo_complet tab_IBS tab_shared_haplo tabDevKey test_lin test_lin test_lin_cox test_lin_ldla test_module_isymmax2sat1 test_nuisances TEST_NUISANCES_TYPE test_print_haplotype THRES_CONFUSION to_integer toCarthagene toCarthagene.f95 TOOLS traitsFileDefined TRANSCIPTOME_ANALYSE tri_haplo_complet TRIO_TYPE TYPE_DATA_CONTINUE TYPE_DATA_COX TYPE_INCIDENCE_SOLUTION TYPE_LRT_SOLUTION

U

unit_genotype unit_mod unit_perf

V

VAL_MAX_INDEX_PHENO VAL_MIN_INDEX_PHENO valeur value_pheno values vecsol vecsol0 vecsol1 VERSION_HAPLOTYPE_PARENTAL_EXTERNAL VERSION_HAPLOTYPE_SNP VERSION_HAPLOTYPE_SNP_PRINT VERSION_HAPLOTYPE_SYMMAX2SAT_SNP VERSION_HAPLOTYPE_V1 VERSION_HAPLOTYPE_V2 VERSION_HAPLOTYPE_V3

W

W write_genea write_map write_perf write_simulation_file write_typ

X

xaldane xinc xmoym xmoym xmoym xmoym2 xmoyp xmoyp xmoyp xmoyp2 xmu01m xmu01p xmu0m xmu0p xmu1g xmu1g xmu1m xmu1m xmu1m xmu1m xmu1m xmu1p xmu1p xmu1p xmu1p xmu1p xmu2m xmu2p XMU_MAX XMU_MIN xmut xosambi xx xxx

Y

y ycategorial ydiscretord yr yt

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - Q - R - S - T - U - V - W - X - Y - Z - 0 - 1 - 2 - 3 - 4 - 5 - 6 - 7 - 8 - 9