Variables

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - Q - R - S - T - U - V - W - X - Y - Z - 0 - 1 - 2 - 3 - 4 - 5 - 6 - 7 - 8 - 9

A

absi all_key alleles am am am am2 animal ap ap ap ap2

B

BASE_STEP bete

C

calculCd carac carac_t carpm carpm carpm1 carpm11 carpm2 carpp carpp carpp1 carpp11 carpp2 carppdf carppdf carppdf11 carppdf11 carppdf12 carppdf22 cary cary11 carydf carydf01 cd cdt ch chromo comp_haplo comp_haplo_reduit corcd corniv corperf corred corregm corregp correm correp correr count_haplo count_haplo_complet cov covar covdir current_chr current_chr current_chr current_chr current_chr current_chr current_chr current_chr2 current_ic current_ic current_ic current_line

D

dataset default_values determ dloggrand

E

eff eff effdf effdf effp effp EPS_LINEAR_HETEROSCEDASTIC estfem estfem_multi estime estime_multi estmum estmum

F

f0 f0 f0 f0 f0 f01 f_1 f_1 femelle filter_vci fm0 fm0 fm0 fm0 fm0 fm01 fm1 fm1 fm1 fm1 fm1 fm2 fm21 fm_1 fm_1 fm_2 fp0 fp0 fp0 fp0 fp0 fp01 fp1 fp1 fp1 fp1 fp1 fp2 fp21 fp_1 fp_1 fp_2

G

gamete genea_list genea_niv geneaFileDefined genealogy_outbred_gen genotyp genotypeFileDefined genotypm gmere gpere

H

h2 h2_t haplo haplo_complet Hy

I

iam iam_multi in_carte in_genea in_param_ef in_parsim in_perfs in_race in_typage index_key index_position_marker indicemod int_qtl int_qtl_t inv_vci

K

keys

L

likelyprob liste_haplo_reduit listelev listModelTrait loc_haplo LONG_MIN_IBS longhap

M

mapFileDefined mark mark0 MAX_LINEAR_ITERATION mcov meff mere mint modele mselec my_desc my_listdesc my_xincreduit my_xincreduitmul

N

nall name_haplo name_haplo_complet name_haplo_reduit namecov namefix namest namest_multi natureY natureY_t nb_gam nb_gam_desc nb_gam_mere nb_gam_pere nb_haplo nb_haplo_complet nb_haplo_possible NB_HAPLO_PRIOR nb_max_haplo NB_OPTI_NLOPT nb_qtl_def nb_value_pheno nbco nbef nbfem nbniv nbnivest ncar ncarcat nchr ncov nd ndelt ndelta ndesc ndm NDMIN nfem nfix ngend ngenom ngm ngmgp ngp niv nivdir nivx nlev nm NMANQUE nmarker_in_genotype_file nmes nmk nmod nmp nmumest np nrgm nteffmax ntlevm ntlevp ntnifix ntniv ntnivmax ntnivmaxtotal ntot nuis nuis_t num_haplo_desc num_haplo_mere num_haplo_pere numero

O

opt_sib opti_user opti_user_fam optim_H_PRECISION optim_maxeval optim_maxtime optim_tolf optim_tolg optim_tolx ordre ordref ordrem ordrep

P

par0 par1 PAS pb_haplo pb_haplo_complet pb_haplo_desc pb_haplo_reduit pc_all pdd pere phasm phasp pheno PHPSEUIL pm_ldla pmt posi posi0 posi_h1 posif posif0 posim posim0 pp_ldla ppt prbm prbp precis precis0 precis1 presentc presentg prob_gam prob_gam_mere prob_gam_pere PROB_HAPLO_MIN PROB_PHASE_DESC prob_seuil_gam PROB_SEUIL_RECOMB probg prop prop_haplo_info prot PRSEUIL PSEUILHWE ptfin

R

rac race_h race_haplo_complet raceFileDefined rangy reconstructed rep_reprom rep_reprop repfem repmere reppere repro reprom reprop rf RhoG RhoG_t rhoi rhoi2 rhoi2_1 rhoi2_2 RhoP RhoP_t rm

S

seuil SEUIL_CHO shared_haplo sig0 sig01 sig1 sig1 sig1 sig1 sig1 sig2 sigt simTyp simulGenea simulMap simulTraits somcd somcddf sompm sompm sompm1 sompm11 sompm1m2 sompm1y sompm2 sompm2y sompmy sompmy sompmy11 sompp sompp sompp1 sompp11 sompp1m1 sompp1m2 sompp1p2 sompp1y sompp2 sompp2m1 sompp2m2 sompp2y somppdf somppdf somppdf1 somppdf11 somppdf2 somppm somppm somppm11 somppy somppy somppy11 somppydf somppydf somppydf1 somppydf11 somppydf2 somy somy11 somydf somydf01 somyy11 somyydf01 Ssy std std std std2 Sy

T

tab_haplo_complet tab_IBS tab_shared_haplo tabDevKey THRES_CONFUSION traitsFileDefined

V

valeur value_pheno values vecsol vecsol0 vecsol1

X

xinc xmoym xmoym xmoym xmoym2 xmoyp xmoyp xmoyp xmoyp2 xmu01m xmu01p xmu0m xmu0p xmu1g xmu1g xmu1m xmu1m xmu1m xmu1m xmu1m xmu1p xmu1p xmu1p xmu1p xmu1p xmu2m xmu2p xmut xx xxx

Y

y ycategorial ydiscretord yr yt

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - Q - R - S - T - U - V - W - X - Y - Z - 0 - 1 - 2 - 3 - 4 - 5 - 6 - 7 - 8 - 9